lumicks.pylake.File¶

class File(filename)¶

A convenient HDF5 file wrapper for reading data exported from Bluelake

Parameters:	filename : str The HDF5 file to open in read-only mode

Examples

from lumicks import pylake

file = pylake.File("example.h5")
file.force1x.plot()
file.kymos["name"].plot()

__init__(filename)¶: Initialize self. See help(type(self)) for accurate signature.

Methods

`__init__`(filename)	Initialize self.
`from_h5py`(h5py_file)	Directly load an existing `h5py.File`

Attributes

`SUPPORTED_FILE_FORMAT_VERSIONS`
`blue_photon_count`
`blue_photon_time_tags`
`bluelake_version`	The version of Bluelake which exported this file
`description`	The description of the measurement as entered by the user in Bluelake
`distance1`
`distance2`
`downsampled_force1`
`downsampled_force1x`
`downsampled_force1y`
`downsampled_force2`
`downsampled_force2x`
`downsampled_force2y`
`downsampled_force3`
`downsampled_force3x`
`downsampled_force3y`
`downsampled_force4`
`downsampled_force4x`
`downsampled_force4y`
`experiment`	The name of the experiment as entered by the user in Bluelake
`export_time`	The moment this file was exported
`fdcurves`
`force1x`
`force1y`
`force2x`
`force2y`
`force3x`
`force3y`
`force4x`
`force4y`
`format_version`	The version of the Bluelake-specific HDF5 file structure
`green_photon_count`
`green_photon_time_tags`
`guid`	An ID which uniquely identifies each exported file
`kymos`
`point_scans`
`red_photon_count`
`red_photon_time_tags`
`scans`

classmethod from_h5py(h5py_file)¶: Directly load an existing h5py.File

description¶: The description of the measurement as entered by the user in Bluelake

experiment¶: The name of the experiment as entered by the user in Bluelake